{ "_id": "6a1f0040b401979e7341ad0a", "Package": "Rediscover", "Type": "Package", "Title": "Identify Mutually Exclusive Mutations", "Version": "0.3.3", "Authors@R": "c(\nperson(given = \"Juan A.\",\nfamily = \"Ferrer-Bonsoms\",\nrole = c(\"aut\", \"cre\"),\nemail = \"jafhernandez@tecnun.es\"),\nperson(given = \"Laura\",\nfamily = \"Jareno\",\nrole = \"aut\"),\nperson(given = \"Angel\",\nfamily = \"Rubio\",\nrole = \"aut\"))", "Maintainer": "Juan A. Ferrer-Bonsoms ", "Description": "An optimized method for identifying mutually exclusive\ngenomic events. Its main contribution is a statistical\nanalysis based on the Poisson-Binomial distribution that takes\ninto account that some samples are more mutated than others.\nSee [Canisius, Sander, John WM Martens, and Lodewyk FA Wessels.\n(2016) \"A novel independence test for somatic alterations in\ncancer shows that biology drives mutual exclusivity but chance\nexplains most co-occurrence.\" Genome biology 17.1 : 1-17.\n]. The mutations matrices are\nsparse matrices. The method developed takes advantage of the\nadvantages of this type of matrix to save time and computing\nresources.", "License": "Artistic-2.0", "LazyData": "true", "RoxygenNote": "7.2.3", "Encoding": "UTF-8", "biocViews": "mutex", "VignetteBuilder": "knitr", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-18 09:00:55 UTC", "User": "root" }, "Config/testthat/edition": "3", "Author": "Juan A. Ferrer-Bonsoms [aut, cre], Laura Jareno [aut], Angel\nRubio [aut]", "Config/pak/sysreqs": "libfftw3-dev libbz2-dev liblzma-dev xz-utils\nzlib1g-dev", "Repository": "https://jferrer-b.r-universe.dev", "Date/Publication": "2025-12-19 17:10:09 UTC", "RemoteUrl": "https://github.com/cran/Rediscover", "RemoteRef": "HEAD", "RemoteSha": "c2ccd683b42cfd0199b888925a4761460070f315", "MD5sum": "81e6303a926dc77f86ccf75550277fa1", "_user": "jferrer-b", "_type": "src", "_file": "Rediscover_0.3.3.tar.gz", "_fileid": "f6a7a9e6f7470ab33871bb5e5988b626f7162794a42020be91f0525c1a33dfd2", "_filesize": 3255276, "_sha256": "f6a7a9e6f7470ab33871bb5e5988b626f7162794a42020be91f0525c1a33dfd2", "_created": "2026-05-18T09:00:55.000Z", "_published": "2026-06-02T16:09:36.334Z", "_distro": "noble", "_jobs": [ { "job": 79116781269, "time": 203, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7053655714" }, { "job": 79116782102, "time": 182, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7053648906" }, { "job": 79116781788, "time": 234, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7053652905" }, { "job": 79116781814, "time": 237, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7053653442" }, { "job": 79116781108, "time": 273, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7053585689" }, { "job": 79116780722, "time": 123, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7363302416" }, { "job": 79116782030, "time": 140, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7053634523" }, { "job": 79116782687, "time": 174, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7053646141" }, { "job": 79116782346, "time": 134, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7053632229" } ], "_buildurl": "https://github.com/r-universe/jferrer-b/actions/runs/26023548958", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/Rediscover", "_commit": { "id": "c2ccd683b42cfd0199b888925a4761460070f315", "author": "Juan A. 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